Turns an anatomical tree into a nodes and edges for visNetwork plotting

Usage

hanatToVisGraph(
  hanatTree,
  colourVariable = "color_hex_triplet",
  colourScale = colorRampPalette(c("red", "yellow"))(255),
  rColourScale = colorRampPalette(c("blue", "turquoise1"))(255),
  low = NULL,
  high = NULL,
  symmetric = F,
  transparent = "#FDFDFD",
  edgeColourFromABI = F
)

hanatView(..., fontsize = 14, levelSeparation = 500)

Arguments

hanatTree: The input anatomical tree
colourVariable: String containing the variable to colour nodes with
colourScale: Colour scale to use
rColourScale: Reverse colour scale to use if symmetric colours enabled
low: Lower cut-off for colour scale
high: Upper cut-off for colour scale
symmetric: Boolean for whether colour scale is symmetric
transparent: Colour to use for transparent nodes
edgeColourFromABI: Whether to set edge colours based on ABI atlas
...: Extra arguments to hanatToVisGraph from hanatView
fontsize: The font size for hanatView
levelSeparation: Spacing between hierarchical layers for hanatView

Value

list with nodes and edges data frames

Functions

hanatView(): Directly view the graph