Read a collection of minc volumes — mincTable • RMINC

This reads a collection of `mincVolumes` into an optionally file-backed matrix

Usage

mincTable(filenames, mask = NULL, file_backed = FALSE, ...)

Arguments

filenames: A character vector of minc filenames. All minc files must have the same shape.
mask: Either a character vector with a path to a mask file, a mincVolume, or a numeric/logical vector indicating which voxels to include in the table.
file_backed: logical, whether to use a file backed matrix for storing the table.
...: Additional arguments to `bigstatr::FBM`

Value

If `file_backed` is `FALSE` return a matrix with ncol equal to the number of files. The number of rows is either the product of the volume dimensions, or if a mask is supplied, the number of voxels where the mask > 0.5. If `file_backed` is `TRUE` return an `FBM` object from the `bigstatr` package.