Calculates statistics and coefficients for linear model of specified vertex files — vertexLm • RMINC

Calculates statistics and coefficients for linear model of specified vertex files

Usage

vertexLm(formula, data, subset = NULL, column = 1)

Arguments

formula: a model formula. The RHS of the formula may contain one term with filenames. If so only the + operator may be used, and only two terms may appear on the RHS
data: a data.frame containing variables in formula
subset: rows to be used, by default all are used
column: Which column to treat as the input from vertex files.

Value

Returns an object containing the R-Squared value,beta coefficients, F and t statistcs that can be passed directly into vertexFDR.

See also

mincLm,anatLm,vertexFDR

Examples

if (FALSE) { # \dontrun{
getRMINCTestData()
gf = read.csv("/tmp/rminctestdata/CIVET_TEST.csv")
gf = civet.getAllFilenames(gf,"ID","TEST","/tmp/rminctestdata/CIVET","TRUE","1.1.12")
gf = civet.readAllCivetFiles("/tmp/rminctestdata/AAL.csv",gf)
result = vertexLm(CIVETFILES$nativeRMStlink20mmleft~Primary.Diagnosis,gf)
} # }