civet.CreateBrainViewROI

Source: R/civet.R

Create a brainview file of a specific ROI

civet.CreateBrainViewROI(atlasFile, atlasVertices, region,
  civetVersion = "1.1.12")

Arguments

atlasFile

File with Atlas label (string-label(int)) mappings
atlasVertices

File with vertex label(int) mappings
region

Region to plot -> Must match name in atlas file exactly
civetVersion

Version of CIVET

Details

Create a .txt file that can be overlaid unto the model template (usually in the CIVET models directory) Currently only CIVET version 1.1.12 is supported.

See also

civet.CreateBrainViewFile

Examples

# NOT RUN {
getRMINCTestData()
civet.CreateBrainViewROI("/tmp/rminctestdata/AAL.csv",
                         "/tmp/rminctestdata/AAL_atlas_left.txt",
                         "Left Insula")
q()
#(The .txt file is written in the working directory and can be viewed via the command)
#brain-view2 $CIVET_DIR/models/surf_reg_model_left.obj ./LeftInsula.txt
# }