Vertex False Discovery Rates

Source: R/minc_FDR.R

Takes the output of a minc modelling function and computes False Discovery Rate thresholds.

vertexFDR(buffer, ...)

# S3 method for vertexMultiDim
vertexFDR(buffer, ...)

# S3 method for vertexLmer
vertexFDR(buffer, ...)

Arguments

buffer

The results of a vertexLm type run.
...

additional parameters to mincFDR like method

Value

A object of type mincQvals with the same number of columns as the input. Each column now contains the qvalues for each vertex. Areas outside the mask (if a mask was specified) will be represented by a value of 1. The result also has an attribute called "thresholds" which contains the 1, 5, 10, 15, and 20 percent false discovery rate thresholds.

Methods (by class)

  • vertexMultiDim: vertexMultiDim

  • vertexLmer: vertexLmer